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Software
Utilities for manipulation of common phylogenetic analysis files in Windows. Written for execution in Python 2.5.2 nex2dat.py - Python script that takes Nexus format data file and outputs .dat format file. pairwise_distances.py - Python script that takes pairwise distances output in the form of a Paup log file and puts all pairwise distances in a single column. short_genbank.py - Python script that takes exported genbank files and truncates the filename to <10 characters without taxon label redundancy. Ready for import to programs requiring .dat format. Also outputs a csv file (open in Excel) showing old name and new name. Written by: dfdeshom@gmail.com. Versions in progress, coding history, and most recent versions hosted at
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